PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0068s0025.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 154aa    MW: 16976.3 Da    PI: 8.8888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0068s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-2174125256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrd + ng  +r++lg+fgtaeeAa a+++a+ +++g+
  Kalax.0068s0025.1.p  74 RYRGVRRRP-WGKYAAEIRDSTRNG--ARVWLGTFGTAEEAALAYDRAAFRMRGA 125
                          7********.**********44465..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-2374133IPR016177DNA-binding domain
PROSITE profilePS5103223.65774132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3074133IPR001471AP2/ERF domain
PfamPF008471.3E-1574124IPR001471AP2/ERF domain
SMARTSM003809.8E-3674138IPR001471AP2/ERF domain
PRINTSPR003673.9E-117586IPR001471AP2/ERF domain
CDDcd000185.82E-2682134No hitNo description
PRINTSPR003673.9E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVKQMQASGQ AAELLPLNEN DSQDMVIFEF LNEAMSMSTN SADHQSFMGH EAASSCCSQR  60
ILQLHPSCGI EKRRYRGVRR RPWGKYAAEI RDSTRNGARV WLGTFGTAEE AALAYDRAAF  120
RMRGARALLN FPAHVVLVSG ETALEPSLSA KRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-3173135466ATERF1
2gcc_A1e-3173135466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148088.18e-52hypothetical protein PHAVU_006G179800g
SwissprotO046812e-45PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLV7BQ208e-52V7BQ20_PHAVU; Uncharacterized protein
STRINGVIT_10s0003g00580.t018e-50(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-26ethylene responsive element binding factor 2